Uses

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BioSQL has been used in a number of research and database projects. This page aims to document those and accumulate a list of examples.

Data integration

  • BioSQL is the database schema and data model underlying SymAtlas. The database runs on Oracle 9i. Bioperl/Bioperl-db is used to import almost all data sourced, and the web-application is implemented using the J2EE technology stack, using JBoss as the application server.

Genomic data

  • Leighton Pritchard: SRCI uses BioSQL "in a database of comparative genomic data for prokaryotes. This involved a small extension of the schema to accommodate mutual relationships between seqfeatures, but essentially it's all BioSQL under the hood."

Google Scholar

At last count there were 85 matches on Google Scholar: http://scholar.google.com/scholar?q=BioSQL

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